Notes
Slide Show
Outline
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ARM Germplasm Manager (AGM)
  • Add-In for ARM 8
  • Gylling Data Management, Inc.
    www.gdmdata.com
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AGM Introduction
  • Database system for managing crop improvement research
  • Is an add-in for ARM version 8
  • Uses ARM to enter, manage, and report individual trials
  • Uses ARM ST (ST) to summarize and report trial series (ST is also an ARM add-in)
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AGM Introduction
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Components
  • Database
    • Use any SQL-compliant relational database.
    • Default is single-user Microsoft Access database.
    • Networked, multi-user DB servers are supported.
  • User Interface
    • Simplifies accessing data in the database.
    • Provides software tools to automate many of the repetitive tasks required to document cultivar improvement.
    • Accesses the database through ARM validation lists.
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Database
  • Relational design links records associated with development of improved varieties.
  • Integrates with ARM and ST to manage multi-year crop performance trials.
  • Simplifies documenting the release of new lines and varieties.
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User Interface
  • Point and click interface to find all information related to a cultivar under development.
  • Simplifies entering crosses and selections.
  • Standardizes pedigree and selection naming conventions.
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User Interface, continued
  • AGM has three main dialogs:
    • Germplasm: shows the plant materials breeders use – varieties, crosses (hybrids), selections, composites (synthetic cultivars).
    • Crossblock: shows entries in crossblocks and crosses made from those blocks.
    • Nursery: shows entries in crop performance trials and related data.
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Germplasm Dialogs
  • Include sub-views that display genealogy
    • Backward (parentage)
    • Forward (selections and crosses).
  • Attach files to germplasm, including
    • ARM Trials
    • Documents (PDF, Word, ...)
    • Images (JPG, PNG, …)
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Germplasm Collection Dialogs
  • Allow users to group together crosses or populations.
  • Sub-views show related :
    • ARM trials (Nurseries)
    • Combinations of parents (Cross Blocks)
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Example 1
  • The next four slides contain paragraphs quoted from the published registration of ‘Expedition’ winter wheat. (Crop Science 44:1470-1471. 2004).
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Crop Sci 44:1470 (2004)
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Crop Sci 44:1470 (2004), cont.
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Crop Sci 44:1470 (2004), cont.
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Crop Sci 44:1470 (2004), cont.
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Viewing Historical Data
  • The next slides show the history of Expedition, as documented in Crop Science, viewed using AGM.
  • In AGM Navigation bar, select “Germplasm”
  • Select the “Open Record” icon from the Germplasm toolbar.
  •  Select “Expedition” from the master validation list.
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Germplasm Dialog – Details (Expedition)
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Germplasm Dialog – Genealogy tab (Expedition)
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Germplasm Dialog – Genealogy Tab (Expedition)
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Germplasm Dialog – Data tab: Phenotype tab (Expedition)
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Germplasm Dialog – Documents tab (Bennett)
  • For the next slide, click Germplasm, then Browse
  • Validate, then display the master list and select “Bennett”
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Germplasm Dialog – Documents (Bennett)
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Germplasm Dialog – Data tab: Trials tab (SD97457)
  • For the next slide, click Germplasm, then Browse
  • Validate, then display the master list and select “SD97457”
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Germplasm Dialog – Data tab: Trials tab (SD97457)
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Example 2
  • A winter wheat line, tested as SD97W609, is ready to be released to growers.
  • The breeder needs to prepare a manuscript for publication in Crop Science.
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Manuscript Preparation
  • Information required for registration in Crop Science includes:
    • Experimental number or designation
    • Names of agencies, organization or institutions
    • Breeding procedures and pedigree
    • Comparative performance data
    • References for parental germplasm
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Preparing Data
  • Import or enter in AGM the historical data relating to the development of SD97W609 - crosses, selections and trials, dating to 1992.
  • Export trials from AGM to ARM ST for analysis.
  • Print two reports, one initiated from AGM and one from ARM ST, to provide a summary of SD97W609 development and testing.
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Germplasm Report

  • Summarizes the information in AGM.
  • Includes information about parent lines.
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SD97W609 Report
  • Germplasm report also lists trials for the selected germplasm.
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Summarizing Trials
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Run ST
  • Use ST to select:
  • Traits to analyze
  • Select the check varieties to compare with experimental lines.
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Crop Performance Results
  • Released cultivar
  • Selected check varieties
  • In format that is ready to include in registration


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List of Summarized Trials
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Other Components
  • AGM also includes tools to simplify many common tasks associated with cultivar improvement, including:
    • Managing cross blocks and pedigrees
    • Tracking seed lots and seed inventory
    • Managing historical data
    • Crop performance testing and selection
    • Cultivar phenotyping
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Summary
  • AGM is a database plus software interface
  • AGM manages and reports crop improvement trials
  • AGM is an add-in to ARM
  • AGM uses ARM to manage trials
  • AGM uses ST to summarize across trials  (ST is also an ARM add-in)